Spanner, Rebecca; Sallam, Ahmad H.; Guo, Yu; Jayakodi, Murukarthick; Himmelbach, Axel; Fiebig, Anne; Simmons, Jamie; Bethke, Gerit; Lee, Yoonjung; Arge, Luis Willian Pacheco; Qiu, Yinjie; Badea, Ana; Baum, Michael; Belzile, Francois; Ben-David, Roi; Brueggeman, Robert; Case, Austin; Cattivelli, Luigi; Davis, Michael; Dockter, Christoph; Dolezel, Jaroslav; Dreiseitl, Antonin; Gavin, Ryan; Glick, Lior; Greiner, Stephan; Hamilton, Ruth; Hayes, Patrick M.; Heisel, Scott; Henson, Cynthia; Kilian, Benjamin; Komatsuda, Takao; Li, Chengdao; Liu, Cheng; Mahalingam, Ramamurthy; Maruschewski, Maren; Matny, Oadi; Maurer, Andreas; Mayer, Klaus F. X.; Mayrose, Itay; Moscou, Matthew; Muehlbauer, Gary J.; Oono, Youko; Ordon, Frank; Ozkan, Hakan; Pecinka, Ales; Perovic, Dragan; Pillen, Klaus; Pourkheirandish, Mohammad; Russell, Joanne; Safar, Jan; Salvi, Silvio; Sanchez-Garcia, Miguel; Sato, Kazuhiro; Schmutzer, Thomas; Scholz, Uwe; Scott, Jeness; Brar, Gurcharn Singh; Smith, Kevin P.; Sorrells, Mark E.; Spannagl, Manuel; Stein, Nils; Tondelli, Alessandro; Tuberosa, Roberto; Tucker, James; Turkington, Thomas; Valkoun, Jan; Verma, Ramesh Pal Singh; Vinje, Marcus A.; Korff, Maria; Walling, Jason G.; Waugh, Robbie; Wise, Roger P.; Wulff, Brande B. H.; Yang, Shengming; Zhang, Guoping; Morrell, Peter L.; Mascher, Martin; Steffenson, Brian J. Whole-genome resequencing of the wild barley diversity collection: a resource for identifying and exploiting genetic variation for cultivated barley improvement Artikel In: G3-GENES GENOMES GENETICS, Bd. 16, Nr. 1, 2026, ISSN: 2160-1836. @article{WOS:001631204600001,
title = {Whole-genome resequencing of the wild barley diversity collection: a resource for identifying and exploiting genetic variation for cultivated barley improvement},
author = {Rebecca Spanner and Ahmad H. Sallam and Yu Guo and Murukarthick Jayakodi and Axel Himmelbach and Anne Fiebig and Jamie Simmons and Gerit Bethke and Yoonjung Lee and Luis Willian Pacheco Arge and Yinjie Qiu and Ana Badea and Michael Baum and Francois Belzile and Roi Ben-David and Robert Brueggeman and Austin Case and Luigi Cattivelli and Michael Davis and Christoph Dockter and Jaroslav Dolezel and Antonin Dreiseitl and Ryan Gavin and Lior Glick and Stephan Greiner and Ruth Hamilton and Patrick M. Hayes and Scott Heisel and Cynthia Henson and Benjamin Kilian and Takao Komatsuda and Chengdao Li and Cheng Liu and Ramamurthy Mahalingam and Maren Maruschewski and Oadi Matny and Andreas Maurer and Klaus F. X. Mayer and Itay Mayrose and Matthew Moscou and Gary J. Muehlbauer and Youko Oono and Frank Ordon and Hakan Ozkan and Ales Pecinka and Dragan Perovic and Klaus Pillen and Mohammad Pourkheirandish and Joanne Russell and Jan Safar and Silvio Salvi and Miguel Sanchez-Garcia and Kazuhiro Sato and Thomas Schmutzer and Uwe Scholz and Jeness Scott and Gurcharn Singh Brar and Kevin P. Smith and Mark E. Sorrells and Manuel Spannagl and Nils Stein and Alessandro Tondelli and Roberto Tuberosa and James Tucker and Thomas Turkington and Jan Valkoun and Ramesh Pal Singh Verma and Marcus A. Vinje and Maria Korff and Jason G. Walling and Robbie Waugh and Roger P. Wise and Brande B. H. Wulff and Shengming Yang and Guoping Zhang and Peter L. Morrell and Martin Mascher and Brian J. Steffenson},
doi = {10.1093/g3journal/jkaf261},
issn = {2160-1836},
year = {2026},
date = {2026-01-01},
urldate = {2026-01-01},
journal = {G3-GENES GENOMES GENETICS},
volume = {16},
number = {1},
abstract = {To exploit allelic variation in Hordeum vulgare subsp. spontaneum, the
Wild Barley Diversity Collection was subjected to paired-end Illumina
sequencing at similar to 9 x depth and evaluated for several agronomic
traits. We discovered 240.2 million single nucleotide polymorphisms
(SNPs) after alignment to the Morex V3 assembly and 24.4 million short
(1 to 50 bp) insertions and deletions. A genome-wide association study
of lemma color identified one marker-trait association (MTA) on
chromosome 1H close to HvBlp, the cloned gene controlling black lemma.
Four MTAs were identified for seedling stem rust resistance, including 2
novel loci on chromosomes 1H and 6H and one co-locating to the complex
RMRL1-RMRL2 locus on 5H. The whole-genome sequence data described herein
will facilitate the identification and utilization of new alleles for
barley improvement.},
keywords = {Genomic data, Sequencing, Variant analysis},
pubstate = {published},
tppubtype = {article}
}
To exploit allelic variation in Hordeum vulgare subsp. spontaneum, the
Wild Barley Diversity Collection was subjected to paired-end Illumina
sequencing at similar to 9 x depth and evaluated for several agronomic
traits. We discovered 240.2 million single nucleotide polymorphisms
(SNPs) after alignment to the Morex V3 assembly and 24.4 million short
(1 to 50 bp) insertions and deletions. A genome-wide association study
of lemma color identified one marker-trait association (MTA) on
chromosome 1H close to HvBlp, the cloned gene controlling black lemma.
Four MTAs were identified for seedling stem rust resistance, including 2
novel loci on chromosomes 1H and 6H and one co-locating to the complex
RMRL1-RMRL2 locus on 5H. The whole-genome sequence data described herein
will facilitate the identification and utilization of new alleles for
barley improvement. |
